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Answers
in the scripts folder in the RapidMiner installation directory there is a script which you can use to start RapidMiner without the GUI. Depending on your operating system it's rapidminer (for Linux; you need to issue "chmod +x" on it before executing it) or rapidminer.bat (on windows).
To execute a process, simply issue Substitute "NewLocalRepository" by the name of your repository in RapidMiner.
A longish, but more detailed discussion can be found here: http://rapid-i.com/rapidforum/index.php/topic,5064.0.html
Best, Marius