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how to log an plot the output from the optimise grid parameters operator
Contributor II
In the sample code below, I'd like to log the optimisation of a model, e.g. finding the best value for K of a KNN model.
to be to plot the performance of the model during optimisation phase. for a number of parameters.
to be to plot the performance of the model during optimisation phase. for a number of parameters.
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<process version="6.3.000">
<context>
<input/>
<output/>
<macros/>
</context>
<operator activated="true" class="process" compatibility="6.3.000" expanded="true" name="Process">
<process expanded="true">
<operator activated="true" class="retrieve" compatibility="6.3.000" expanded="true" height="60" name="Iris" width="90" x="45" y="75">
<parameter key="repository_entry" value="//Samples/data/Iris"/>
</operator>
<operator activated="true" class="split_data" compatibility="6.3.000" expanded="true" height="94" name="70/30" width="90" x="45" y="300">
<enumeration key="partitions">
<parameter key="ratio" value="0.7"/>
<parameter key="ratio" value="0.3"/>
</enumeration>
<parameter key="sampling_type" value="stratified sampling"/>
</operator>
<operator activated="true" class="optimize_parameters_grid" compatibility="6.3.000" expanded="true" height="130" name="Optimize Parameters (Grid)" width="90" x="246" y="120">
<list key="parameters">
<parameter key="k-NN.k" value="[1.0;20;20;linear]"/>
</list>
<parameter key="parallelize_optimization_process" value="true"/>
<process expanded="true">
<operator activated="true" class="x_validation" compatibility="6.3.000" expanded="true" height="112" name="Validation" width="90" x="112" y="30">
<parameter key="number_of_validations" value="5"/>
<parameter key="parallelize_training" value="true"/>
<parameter key="parallelize_testing" value="true"/>
<process expanded="true">
<operator activated="true" class="k_nn" compatibility="6.3.000" expanded="true" height="76" name="k-NN" width="90" x="45" y="30">
<parameter key="k" value="20"/>
</operator>
<connect from_port="training" to_op="k-NN" to_port="training set"/>
<connect from_op="k-NN" from_port="model" to_port="model"/>
<portSpacing port="source_training" spacing="0"/>
<portSpacing port="sink_model" spacing="0"/>
<portSpacing port="sink_through 1" spacing="0"/>
</process>
<process expanded="true">
<operator activated="true" class="apply_model" compatibility="6.3.000" expanded="true" height="76" name="Apply Model" width="90" x="45" y="30">
<list key="application_parameters"/>
</operator>
<operator activated="true" class="performance_classification" compatibility="6.3.000" expanded="true" height="76" name="Performance (2)" width="90" x="179" y="30">
<parameter key="classification_error" value="true"/>
<parameter key="weighted_mean_recall" value="true"/>
<parameter key="weighted_mean_precision" value="true"/>
<list key="class_weights"/>
</operator>
<connect from_port="model" to_op="Apply Model" to_port="model"/>
<connect from_port="test set" to_op="Apply Model" to_port="unlabelled data"/>
<connect from_op="Apply Model" from_port="labelled data" to_op="Performance (2)" to_port="labelled data"/>
<connect from_op="Performance (2)" from_port="performance" to_port="averagable 1"/>
<portSpacing port="source_model" spacing="0"/>
<portSpacing port="source_test set" spacing="0"/>
<portSpacing port="source_through 1" spacing="0"/>
<portSpacing port="sink_averagable 1" spacing="0"/>
<portSpacing port="sink_averagable 2" spacing="0"/>
</process>
</operator>
<operator activated="true" class="remember" compatibility="6.3.000" expanded="true" height="60" name="Remember" width="90" x="246" y="30">
<parameter key="name" value="Mymodel"/>
<parameter key="io_object" value="Model"/>
</operator>
<connect from_port="input 1" to_op="Validation" to_port="training"/>
<connect from_op="Validation" from_port="model" to_op="Remember" to_port="store"/>
<connect from_op="Validation" from_port="training" to_port="result 2"/>
<connect from_op="Validation" from_port="averagable 1" to_port="performance"/>
<connect from_op="Remember" from_port="stored" to_port="result 1"/>
<portSpacing port="source_input 1" spacing="0"/>
<portSpacing port="source_input 2" spacing="0"/>
<portSpacing port="sink_performance" spacing="0"/>
<portSpacing port="sink_result 1" spacing="0"/>
<portSpacing port="sink_result 2" spacing="0"/>
<portSpacing port="sink_result 3" spacing="0"/>
</process>
</operator>
<operator activated="true" class="delay" compatibility="6.3.000" expanded="true" height="76" name="Delay" width="90" x="179" y="345">
<parameter key="delay" value="random"/>
<parameter key="min_delay_amount" value="10"/>
<parameter key="max_delay_amount" value="1010"/>
</operator>
<operator activated="true" class="subprocess" compatibility="6.3.000" expanded="true" height="112" name="ApplyModel" width="90" x="313" y="345">
<process expanded="true">
<operator activated="true" class="select_attributes" compatibility="6.3.000" expanded="true" height="76" name="Select Attributes" width="90" x="112" y="120">
<parameter key="attribute_filter_type" value="single"/>
<parameter key="attribute" value="label"/>
<parameter key="invert_selection" value="true"/>
</operator>
<operator activated="true" class="recall" compatibility="6.3.000" expanded="true" height="60" name="Recall" width="90" x="112" y="30">
<parameter key="name" value="Mymodel"/>
<parameter key="io_object" value="Model"/>
</operator>
<operator activated="true" class="apply_model" compatibility="6.3.000" expanded="true" height="76" name="Apply Model (2)" width="90" x="246" y="75">
<list key="application_parameters"/>
</operator>
<connect from_port="in 1" to_op="Select Attributes" to_port="example set input"/>
<connect from_op="Select Attributes" from_port="example set output" to_op="Apply Model (2)" to_port="unlabelled data"/>
<connect from_op="Select Attributes" from_port="original" to_port="out 3"/>
<connect from_op="Recall" from_port="result" to_op="Apply Model (2)" to_port="model"/>
<connect from_op="Apply Model (2)" from_port="labelled data" to_port="out 1"/>
<connect from_op="Apply Model (2)" from_port="model" to_port="out 2"/>
<portSpacing port="source_in 1" spacing="0"/>
<portSpacing port="source_in 2" spacing="0"/>
<portSpacing port="sink_out 1" spacing="0"/>
<portSpacing port="sink_out 2" spacing="0"/>
<portSpacing port="sink_out 3" spacing="0"/>
<portSpacing port="sink_out 4" spacing="0"/>
</process>
</operator>
<operator activated="true" class="subprocess" compatibility="6.3.000" expanded="true" height="94" name="Eval Model" width="90" x="447" y="345">
<process expanded="true">
<operator activated="true" class="join" compatibility="6.3.000" expanded="true" height="76" name="Join" width="90" x="45" y="30">
<parameter key="join_type" value="outer"/>
<list key="key_attributes"/>
</operator>
<operator activated="true" class="rename_by_replacing" compatibility="6.3.000" expanded="true" height="76" name="Rename by Replacing" width="90" x="179" y="30">
<parameter key="include_special_attributes" value="true"/>
</operator>
<operator activated="true" class="generate_attributes" compatibility="6.3.000" expanded="true" height="76" name="Generate Attributes" width="90" x="313" y="30">
<list key="function_descriptions">
<parameter key="scoreEval" value="if(predictionlabel==label,"true","false")"/>
</list>
<parameter key="use_standard_constants" value="false"/>
</operator>
<connect from_port="in 1" to_op="Join" to_port="left"/>
<connect from_port="in 2" to_op="Join" to_port="right"/>
<connect from_op="Join" from_port="join" to_op="Rename by Replacing" to_port="example set input"/>
<connect from_op="Rename by Replacing" from_port="example set output" to_op="Generate Attributes" to_port="example set input"/>
<connect from_op="Generate Attributes" from_port="example set output" to_port="out 1"/>
<portSpacing port="source_in 1" spacing="0"/>
<portSpacing port="source_in 2" spacing="0"/>
<portSpacing port="source_in 3" spacing="0"/>
<portSpacing port="sink_out 1" spacing="0"/>
<portSpacing port="sink_out 2" spacing="0"/>
</process>
</operator>
<connect from_op="Iris" from_port="output" to_op="70/30" to_port="example set"/>
<connect from_op="70/30" from_port="partition 1" to_op="Optimize Parameters (Grid)" to_port="input 1"/>
<connect from_op="70/30" from_port="partition 2" to_op="Delay" to_port="through 1"/>
<connect from_op="Delay" from_port="through 1" to_op="ApplyModel" to_port="in 1"/>
<connect from_op="ApplyModel" from_port="out 1" to_op="Eval Model" to_port="in 1"/>
<connect from_op="ApplyModel" from_port="out 3" to_op="Eval Model" to_port="in 2"/>
<connect from_op="Eval Model" from_port="out 1" to_port="result 1"/>
<portSpacing port="source_input 1" spacing="0"/>
<portSpacing port="sink_result 1" spacing="0"/>
<portSpacing port="sink_result 2" spacing="0"/>
</process>
</operator>
</process>
0
Answers
And why do you need the delay?
Cheers,
Martin
Dortmund, Germany
cheers for the heads up on the remember / recall; I had missed picking up the port from the optimise as apposed to the validation.
I thought I needed the delay to allow the optimise to complete. when I reorder the process execution it works fine without it.
thanks for the help.