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Executing file on Mac
Guru
Has something changed with the execute programs operator?
<?xml version="1.0" encoding="UTF-8"?><process version="9.4.001">
<context>
<input/>
<output/>
<macros/>
</context>
<operator activated="true" class="process" compatibility="9.4.001" expanded="true" name="Process">
<parameter key="logverbosity" value="init"/>
<parameter key="random_seed" value="2001"/>
<parameter key="send_mail" value="never"/>
<parameter key="notification_email" value=""/>
<parameter key="process_duration_for_mail" value="30"/>
<parameter key="encoding" value="SYSTEM"/>
<process expanded="true">
<operator activated="true" class="text:create_document" compatibility="8.2.000" expanded="true" height="68" name="generate query" width="90" x="45" y="85">
<parameter key="text" value="aws athena start-query-execution --query-string "select * from table where col0 like 'number';" --result-configuration "OutputLocation=s3://" "/>
<parameter key="add label" value="false"/>
<parameter key="label_type" value="nominal"/>
</operator>
<operator activated="true" class="text:write_document" compatibility="8.2.000" expanded="true" height="82" name="overwrite query" width="90" x="179" y="85">
<parameter key="file" value="/Users/robinmeisel/Dropbox/psyscore/master.sh"/>
<parameter key="overwrite" value="true"/>
<parameter key="encoding" value="SYSTEM"/>
</operator>
<operator activated="true" class="productivity:execute_program" compatibility="9.4.001" expanded="true" height="124" name="Execute Program" width="90" x="313" y="85">
<parameter key="command" value="chmod +x master.sh"/>
<parameter key="log_stdout" value="true"/>
<parameter key="log_stderr" value="false"/>
<parameter key="working_directory" value="/Users/execute"/>
<list key="env_variables"/>
</operator>
<operator activated="true" class="productivity:execute_program" compatibility="9.4.001" expanded="true" height="124" name="Execute Program (2)" width="90" x="447" y="85">
<parameter key="command" value="./master.sh"/>
<parameter key="log_stdout" value="true"/>
<parameter key="log_stderr" value="true"/>
<parameter key="working_directory" value="/Users/execute"/>
<list key="env_variables"/>
</operator>
<connect from_op="generate query" from_port="output" to_op="overwrite query" to_port="document"/>
<connect from_op="overwrite query" from_port="document" to_op="Execute Program" to_port="through 1"/>
<connect from_op="Execute Program" from_port="out" to_op="Execute Program (2)" to_port="through 1"/>
<portSpacing port="source_input 1" spacing="0"/>
<portSpacing port="sink_result 1" spacing="0"/>
</process>
</operator>
</process>I am now getting this error where the process used to work perfectly. Any ideas?
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Answers
What is your OS X version?
Regards,
Marco
Nothing has changed with the operator code itself in the past 4 years, so I would suspect it has to do something with an external change of some description.
According to https://stackoverflow.com/a/1763178/2333093, you get this if the command is not found or if +x is missing. I just noticed that your script is written to "/Users/robinmeisel/Dropbox/psyscore/master.sh", while your working directory is set to "/Users/execute". That explains why it complains that the file cannot be found.
I just tested it with an absolute path and a relative path + setting the working directory on (not yet officially supported) OS X 10.15, and it works fine.
Regards,
Marco
Would be able to post the code that you have run, here I have set the paths to be the same but I am still getting an error?
<?xml version="1.0" encoding="UTF-8"?><process version="9.4.001"> <context> <input/> <output/> <macros/> </context> <operator activated="true" class="process" compatibility="9.4.001" expanded="true" name="Process"> <parameter key="logverbosity" value="init"/> <parameter key="random_seed" value="2001"/> <parameter key="send_mail" value="never"/> <parameter key="notification_email" value=""/> <parameter key="process_duration_for_mail" value="30"/> <parameter key="encoding" value="SYSTEM"/> <process expanded="true"> <operator activated="false" class="set_macro" compatibility="9.4.001" expanded="true" height="68" name="Set Macro (3)" width="90" x="45" y="289"> <parameter key="macro" value="uuid"/> <parameter key="value" value="25bb14c72b49dfbe594349d69790075e"/> </operator> <operator activated="true" class="utility:create_exampleset" compatibility="9.4.001" expanded="true" height="68" name="Create ExampleSet" width="90" x="179" y="34"> <parameter key="generator_type" value="attribute functions"/> <parameter key="number_of_examples" value="1"/> <parameter key="use_stepsize" value="false"/> <list key="function_descriptions"> <parameter key="uuid" value=""c95bc761eb81cfbba92046f7d8ec1b21""/> </list> <parameter key="add_id_attribute" value="false"/> <list key="numeric_series_configuration"/> <list key="date_series_configuration"/> <list key="date_series_configuration (interval)"/> <parameter key="date_format" value="yyyy-MM-dd HH:mm:ss"/> <parameter key="time_zone" value="SYSTEM"/> <parameter key="column_separator" value=","/> <parameter key="parse_all_as_nominal" value="false"/> <parameter key="decimal_point_character" value="."/> <parameter key="trim_attribute_names" value="true"/> </operator> <operator activated="true" class="loop_examples" compatibility="9.4.001" expanded="true" height="82" name="Loop Examples" width="90" x="447" y="34"> <parameter key="iteration_macro" value="eg_uuid"/> <process expanded="true"> <operator activated="true" class="extract_macro" compatibility="9.4.001" expanded="true" height="68" name="Extract Macro (4)" width="90" x="179" y="34"> <parameter key="macro" value="uuid"/> <parameter key="macro_type" value="data_value"/> <parameter key="statistics" value="average"/> <parameter key="attribute_name" value="uuid"/> <parameter key="example_index" value="%{eg_uuid}"/> <list key="additional_macros"/> </operator> <operator activated="true" class="handle_exception" compatibility="9.4.001" expanded="true" height="68" name="Handle Exception (4)" width="90" x="313" y="34"> <parameter key="add_details_to_log" value="false"/> <process expanded="true"> <operator activated="true" class="concurrency:loop_files" compatibility="8.2.000" expanded="true" height="68" name="Loop Files (2)" width="90" x="112" y="136"> <parameter key="directory" value="/Users/robinmeisel/Dropbox/psyscore/sync"/> <parameter key="filter_type" value="regex"/> <parameter key="filter_by_regex" value=".*"/> <parameter key="recursive" value="false"/> <parameter key="enable_macros" value="true"/> <parameter key="macro_for_file_name" value="del_file"/> <parameter key="macro_for_file_type" value="file_type"/> <parameter key="macro_for_folder_name" value="folder_name"/> <parameter key="reuse_results" value="false"/> <parameter key="enable_parallel_execution" value="true"/> <process expanded="true"> <operator activated="true" class="delete_file" compatibility="9.4.001" expanded="true" height="68" name="Delete File" width="90" x="380" y="187"> <parameter key="file" value="/Users/robinmeisel/Dropbox/psyscore/sync/%{del_file}"/> <parameter key="fail_if_missing" value="false"/> </operator> <portSpacing port="source_file object" spacing="0"/> <portSpacing port="source_input 1" spacing="0"/> <portSpacing port="sink_output 1" spacing="0"/> </process> <description align="center" color="transparent" colored="false" width="126">Delete from local drive</description> </operator> <portSpacing port="source_in 1" spacing="0"/> <portSpacing port="sink_out 1" spacing="0"/> </process> <process expanded="true"> <portSpacing port="source_in 1" spacing="0"/> <portSpacing port="sink_out 1" spacing="0"/> </process> </operator> <operator activated="true" class="text:create_document" compatibility="8.2.000" expanded="true" height="68" name="generate query" width="90" x="313" y="238"> <parameter key="text" value="aws athena start-query-execution --query-string "select * from psyche.psychepsychemaster where uuid like '%{uuid}' limit 1;" --result-configuration "OutputLocation=s3://psyscores/output/" "/> <parameter key="add label" value="false"/> <parameter key="label_type" value="nominal"/> <description align="center" color="transparent" colored="false" width="126">Select master from S3</description> </operator> <operator activated="true" class="text:write_document" compatibility="8.2.000" expanded="true" height="82" name="overwrite query (4)" width="90" x="447" y="238"> <parameter key="file" value="/Users/robinmeisel/Dropbox/psyscore/master.sh"/> <parameter key="overwrite" value="true"/> <parameter key="encoding" value="SYSTEM"/> </operator> <operator activated="true" class="productivity:execute_program" compatibility="9.4.001" expanded="true" height="124" name="Execute Program (4)" width="90" x="581" y="238"> <parameter key="command" value="chmod +x master.sh"/> <parameter key="log_stdout" value="true"/> <parameter key="log_stderr" value="false"/> <parameter key="working_directory" value="/Users/robinmeisel/Dropbox/psyscore"/> <list key="env_variables"/> </operator> <operator activated="true" class="productivity:execute_program" compatibility="9.4.001" expanded="true" height="124" name="Execute Program (6)" width="90" x="715" y="238"> <parameter key="command" value="./master.sh"/> <parameter key="log_stdout" value="true"/> <parameter key="log_stderr" value="true"/> <parameter key="working_directory" value="/Users/robinmeisel/Dropbox/psyscore"/> <list key="env_variables"/> </operator> <operator activated="true" class="text:create_document" compatibility="8.2.000" expanded="true" height="68" name="generate query (3)" width="90" x="313" y="391"> <parameter key="text" value="aws athena start-query-execution --query-string "select * from psyche.psychepsycheemail where uuid like '%{uuid}' limit 1;" --result-configuration "OutputLocation=s3://psyscores/output/" "/> <parameter key="add label" value="false"/> <parameter key="label_type" value="nominal"/> <description align="center" color="transparent" colored="false" width="126">Select email from S3</description> </operator> <operator activated="true" class="text:write_document" compatibility="8.2.000" expanded="true" height="82" name="overwrite query (3)" width="90" x="447" y="391"> <parameter key="file" value="/Users/robinmeisel/Dropbox/psyscore/email.sh"/> <parameter key="overwrite" value="true"/> <parameter key="encoding" value="SYSTEM"/> </operator> <operator activated="true" class="productivity:execute_program" compatibility="9.4.001" expanded="true" height="124" name="Execute Program (5)" width="90" x="581" y="391"> <parameter key="command" value="chmod +x email.sh"/> <parameter key="log_stdout" value="true"/> <parameter key="log_stderr" value="true"/> <parameter key="working_directory" value="/Users/robinmeisel/Dropbox/psyscore"/> <list key="env_variables"/> </operator> <operator activated="true" class="productivity:execute_program" compatibility="9.4.001" expanded="true" height="124" name="Execute Program" width="90" x="715" y="391"> <parameter key="command" value="./email.sh"/> <parameter key="log_stdout" value="true"/> <parameter key="log_stderr" value="true"/> <parameter key="working_directory" value="/Users/robinmeisel/Dropbox/psyscore"/> <list key="env_variables"/> </operator> <operator activated="true" class="text:create_document" compatibility="8.2.000" expanded="true" height="68" name="generate queru (2)" width="90" x="313" y="544"> <parameter key="text" value="aws athena start-query-execution --query-string "select * from psyche.psychepsychemobile where uuid like '%{uuid}' limit 1;" --result-configuration "OutputLocation=s3://psyscores/output/" "/> <parameter key="add label" value="false"/> <parameter key="label_type" value="nominal"/> <description align="center" color="transparent" colored="false" width="126">Select mobile from S3</description> </operator> <operator activated="true" class="text:write_document" compatibility="8.2.000" expanded="true" height="82" name="overwrite query (2)" width="90" x="447" y="544"> <parameter key="file" value="/Users/robinmeisel/Dropbox/psyscore/mobile.sh"/> <parameter key="overwrite" value="true"/> <parameter key="encoding" value="SYSTEM"/> </operator> <operator activated="true" class="productivity:execute_program" compatibility="9.4.001" expanded="true" height="124" name="Execute Program (3)" width="90" x="581" y="544"> <parameter key="command" value="chmod +x mobile.sh"/> <parameter key="log_stdout" value="true"/> <parameter key="log_stderr" value="true"/> <parameter key="working_directory" value="/Users/robinmeisel/Dropbox/psyscore"/> <list key="env_variables"/> </operator> <operator activated="true" class="productivity:execute_program" compatibility="9.4.001" expanded="true" height="103" name="Execute Program (7)" width="90" x="715" y="544"> <parameter key="command" value="./mobile.sh"/> <parameter key="log_stdout" value="true"/> <parameter key="log_stderr" value="true"/> <parameter key="working_directory" value="/Users/robinmeisel/Dropbox/psyscore"/> <list key="env_variables"/> </operator> <operator activated="true" class="delay" compatibility="9.4.001" expanded="true" height="68" name="Delay" width="90" x="916" y="340"> <parameter key="delay" value="fixed"/> <parameter key="delay_amount" value="20000"/> <parameter key="min_delay_amount" value="0"/> <parameter key="max_delay_amount" value="1000"/> </operator> <operator activated="true" class="concurrency:loop_files" compatibility="8.2.000" expanded="true" height="124" name="Loop Files" width="90" x="313" y="697"> <parameter key="directory" value="/Users/robinmeisel/Dropbox/psyscore/sync"/> <parameter key="filter_type" value="regex"/> <parameter key="filter_by_regex" value=".*.csv"/> <parameter key="recursive" value="false"/> <parameter key="enable_macros" value="true"/> <parameter key="macro_for_file_name" value="file_extract"/> <parameter key="macro_for_file_type" value="file_type_2"/> <parameter key="macro_for_folder_name" value="folder_name_2"/> <parameter key="reuse_results" value="false"/> <parameter key="enable_parallel_execution" value="true"/> <process expanded="true"> <operator activated="true" class="multiply" compatibility="9.4.001" expanded="true" height="124" name="Multiply" width="90" x="45" y="34"/> <operator activated="true" class="handle_exception" compatibility="9.4.001" expanded="true" height="82" name="Handle Exception (3)" width="90" x="313" y="238"> <parameter key="add_details_to_log" value="false"/> <process expanded="true"> <operator activated="true" class="read_csv" compatibility="9.4.001" expanded="true" height="68" name="Read CSV (3)" width="90" x="112" y="187"> <parameter key="csv_file" value="/Users/robinmeisel/Dropbox/psyscore/sync/09c704d7-7bf4-4331-9800-2606edf6ee33.csv"/> <parameter key="column_separators" value=","/> <parameter key="trim_lines" value="false"/> <parameter key="use_quotes" value="true"/> <parameter key="quotes_character" value="""/> <parameter key="escape_character" value="\"/> <parameter key="skip_comments" value="true"/> <parameter key="comment_characters" value="#"/> <parameter key="starting_row" value="1"/> <parameter key="parse_numbers" value="true"/> <parameter key="decimal_character" value="."/> <parameter key="grouped_digits" value="false"/> <parameter key="grouping_character" value=","/> <parameter key="infinity_representation" value=""/> <parameter key="date_format" value=""/> <parameter key="first_row_as_names" value="true"/> <list key="annotations"/> <parameter key="time_zone" value="SYSTEM"/> <parameter key="locale" value="English (United States)"/> <parameter key="encoding" value="UTF-8"/> <parameter key="read_all_values_as_polynominal" value="false"/> <list key="data_set_meta_data_information"> <parameter key="0" value="uuid.true.polynominal.attribute"/> <parameter key="1" value="id_number.true.polynominal.attribute"/> <parameter key="2" value="title.true.polynominal.attribute"/> <parameter key="3" value="firstname.true.polynominal.attribute"/> <parameter key="4" value="lastname.true.polynominal.attribute"/> <parameter key="5" value="gender.true.polynominal.attribute"/> </list> <parameter key="read_not_matching_values_as_missings" value="false"/> <parameter key="datamanagement" value="double_array"/> <parameter key="data_management" value="auto"/> </operator> <operator activated="true" class="extract_macro" compatibility="9.4.001" expanded="true" height="68" name="Extract Macro (3)" width="90" x="380" y="187"> <parameter key="macro" value="uuid"/> <parameter key="macro_type" value="data_value"/> <parameter key="statistics" value="average"/> <parameter key="attribute_name" value="uuid"/> <parameter key="example_index" value="1"/> <list key="additional_macros"> <parameter key="firstname" value="firstname"/> <parameter key="lastname" value="lastname"/> <parameter key="id_number" value="id_number"/> </list> </operator> <connect from_port="in 1" to_op="Read CSV (3)" to_port="file"/> <connect from_op="Read CSV (3)" from_port="output" to_op="Extract Macro (3)" to_port="example set"/> <connect from_op="Extract Macro (3)" from_port="example set" to_port="out 1"/> <portSpacing port="source_in 1" spacing="0"/> <portSpacing port="source_in 2" spacing="0"/> <portSpacing port="sink_out 1" spacing="0"/> <portSpacing port="sink_out 2" spacing="0"/> </process> <process expanded="true"> <portSpacing port="source_in 1" spacing="0"/> <portSpacing port="source_in 2" spacing="0"/> <portSpacing port="sink_out 1" spacing="0"/> <portSpacing port="sink_out 2" spacing="0"/> </process> </operator> <operator activated="true" class="handle_exception" compatibility="9.4.001" expanded="true" height="82" name="Handle Exception" width="90" x="313" y="136"> <parameter key="add_details_to_log" value="false"/> <process expanded="true"> <operator activated="true" class="read_csv" compatibility="9.4.001" expanded="true" height="68" name="Read CSV (2)" width="90" x="45" y="34"> <parameter key="csv_file" value="/Users/robinmeisel/Dropbox/psyscore/sync/1700898a-c9c8-408c-a2bf-6664e0c33703.csv"/> <parameter key="column_separators" value=","/> <parameter key="trim_lines" value="false"/> <parameter key="use_quotes" value="true"/> <parameter key="quotes_character" value="""/> <parameter key="escape_character" value="\"/> <parameter key="skip_comments" value="true"/> <parameter key="comment_characters" value="#"/> <parameter key="starting_row" value="1"/> <parameter key="parse_numbers" value="true"/> <parameter key="decimal_character" value="."/> <parameter key="grouped_digits" value="false"/> <parameter key="grouping_character" value=","/> <parameter key="infinity_representation" value=""/> <parameter key="date_format" value="yyyy-MM-dd HH:mm:ss"/> <parameter key="first_row_as_names" value="true"/> <list key="annotations"/> <parameter key="time_zone" value="SYSTEM"/> <parameter key="locale" value="English (United States)"/> <parameter key="encoding" value="UTF-8"/> <parameter key="read_all_values_as_polynominal" value="false"/> <list key="data_set_meta_data_information"> <parameter key="0" value="uuid.true.polynominal.attribute"/> <parameter key="1" value="mobile.true.integer.attribute"/> <parameter key="2" value="date.true.date_time.attribute"/> </list> <parameter key="read_not_matching_values_as_missings" value="false"/> <parameter key="datamanagement" value="double_array"/> <parameter key="data_management" value="auto"/> </operator> <operator activated="true" class="select_attributes" compatibility="9.4.001" expanded="true" height="82" name="Select Attributes" width="90" x="179" y="34"> <parameter key="attribute_filter_type" value="subset"/> <parameter key="attribute" value=""/> <parameter key="attributes" value="mobile|uuid"/> <parameter key="use_except_expression" value="false"/> <parameter key="value_type" value="attribute_value"/> <parameter key="use_value_type_exception" value="false"/> <parameter key="except_value_type" value="time"/> <parameter key="block_type" value="attribute_block"/> <parameter key="use_block_type_exception" value="false"/> <parameter key="except_block_type" value="value_matrix_row_start"/> <parameter key="invert_selection" value="false"/> <parameter key="include_special_attributes" value="false"/> </operator> <connect from_port="in 1" to_op="Read CSV (2)" to_port="file"/> <connect from_op="Read CSV (2)" from_port="output" to_op="Select Attributes" to_port="example set input"/> <connect from_op="Select Attributes" from_port="example set output" to_port="out 1"/> <portSpacing port="source_in 1" spacing="0"/> <portSpacing port="source_in 2" spacing="0"/> <portSpacing port="sink_out 1" spacing="0"/> <portSpacing port="sink_out 2" spacing="0"/> </process> <process expanded="true"> <portSpacing port="source_in 1" spacing="0"/> <portSpacing port="source_in 2" spacing="0"/> <portSpacing port="sink_out 1" spacing="0"/> <portSpacing port="sink_out 2" spacing="0"/> </process> </operator> <operator activated="true" class="handle_exception" compatibility="9.4.001" expanded="true" height="82" name="Handle Exception (2)" width="90" x="313" y="34"> <parameter key="add_details_to_log" value="false"/> <process expanded="true"> <operator activated="true" class="read_csv" compatibility="9.4.001" expanded="true" height="68" name="Read CSV" width="90" x="112" y="34"> <parameter key="csv_file" value="/Users/robinmeisel/Dropbox/psyscore/sync/cf9b7ee4-3f08-4e99-9d6c-c794fa26417c.csv"/> <parameter key="column_separators" value=","/> <parameter key="trim_lines" value="false"/> <parameter key="use_quotes" value="true"/> <parameter key="quotes_character" value="""/> <parameter key="escape_character" value="\"/> <parameter key="skip_comments" value="true"/> <parameter key="comment_characters" value="#"/> <parameter key="starting_row" value="1"/> <parameter key="parse_numbers" value="true"/> <parameter key="decimal_character" value="."/> <parameter key="grouped_digits" value="false"/> <parameter key="grouping_character" value=","/> <parameter key="infinity_representation" value=""/> <parameter key="date_format" value="yyyy-MM-dd HH:mm:ss"/> <parameter key="first_row_as_names" value="true"/> <list key="annotations"/> <parameter key="time_zone" value="SYSTEM"/> <parameter key="locale" value="English (United States)"/> <parameter key="encoding" value="UTF-8"/> <parameter key="read_all_values_as_polynominal" value="false"/> <list key="data_set_meta_data_information"> <parameter key="0" value="uuid.true.polynominal.attribute"/> <parameter key="1" value="email.true.polynominal.attribute"/> <parameter key="2" value="date.true.date_time.attribute"/> </list> <parameter key="read_not_matching_values_as_missings" value="false"/> <parameter key="datamanagement" value="double_array"/> <parameter key="data_management" value="auto"/> </operator> <operator activated="true" class="filter_examples" compatibility="9.4.001" expanded="true" height="103" name="Filter Examples" width="90" x="246" y="34"> <parameter key="parameter_expression" value=""/> <parameter key="condition_class" value="custom_filters"/> <parameter key="invert_filter" value="false"/> <list key="filters_list"> <parameter key="filters_entry_key" value="email.contains.@/> </list> <parameter key=filters_logic_and" value="true"/> <parameter key="filters_check_metadata" value="true"/> </operator> <connect from_port="in 1" to_op="Read CSV" to_port="file"/> <connect from_op="Read CSV" from_port="output" to_op="Filter Examples" to_port="example set input"/> <connect from_op="Filter Examples" from_port="example set output" to_port="out 1"/> <portSpacing port="source_in 1" spacing="0"/> <portSpacing port="source_in 2" spacing="0"/> <portSpacing port="sink_out 1" spacing="0"/> <portSpacing port="sink_out 2" spacing="0"/> </process> <process expanded="true"> <portSpacing port="source_in 1" spacing="0"/> <portSpacing port="source_in 2" spacing="0"/> <portSpacing port="sink_out 1" spacing="0"/> <portSpacing port="sink_out 2" spacing="0"/> </process> </operator> <connect from_port="file object" to_op="Multiply" to_port="input"/> <connect from_op="Multiply" from_port="output 1" to_op="Handle Exception (2)" to_port="in 1"/> <connect from_op="Multiply" from_port="output 2" to_op="Handle Exception" to_port="in 1"/> <connect from_op="Multiply" from_port="output 3" to_op="Handle Exception (3)" to_port="in 1"/> <connect from_op="Handle Exception (3)" from_port="out 1" to_port="output 2"/> <connect from_op="Handle Exception" from_port="out 1" to_port="output 3"/> <connect from_op="Handle Exception (2)" from_port="out 1" to_port="output 1"/> <portSpacing port="source_file object" spacing="0"/> <portSpacing port="source_input 1" spacing="0"/> <portSpacing port="sink_output 1" spacing="0"/> <portSpacing port="sink_output 2" spacing="0"/> <portSpacing port="sink_output 3" spacing="0"/> <portSpacing port="sink_output 4" spacing="0"/> </process> <description align="center" color="transparent" colored="false" width="126">Join CSV files from Athena</description> </operator> <operator activated="true" class="append" compatibility="9.4.001" expanded="true" height="82" name="Append (4)" width="90" x="581" y="697"> <parameter key="datamanagement" value="double_array"/> <parameter key="data_management" value="auto"/> <parameter key="merge_type" value="all"/> </operator> <operator activated="true" class="append" compatibility="9.4.001" expanded="true" height="82" name="Append (3)" width="90" x="581" y="901"> <parameter key="datamanagement" value="double_array"/> <parameter key="data_management" value="auto"/> <parameter key="merge_type" value="all"/> </operator> <operator activated="true" class="append" compatibility="9.4.001" expanded="true" height="82" name="Append" width="90" x="581" y="799"> <parameter key="datamanagement" value="double_array"/> <parameter key="data_management" value="auto"/> <parameter key="merge_type" value="all"/> </operator> <operator activated="true" class="concurrency:join" compatibility="9.4.001" expanded="true" height="82" name="Join" width="90" x="715" y="850"> <parameter key="remove_double_attributes" value="true"/> <parameter key="join_type" value="left"/> <parameter key="use_id_attribute_as_key" value="false"/> <list key="key_attributes"> <parameter key="uuid" value="uuid"/> </list> <parameter key="keep_both_join_attributes" value="false"/> </operator> <operator activated="true" class="concurrency:join" compatibility="9.4.001" expanded="true" height="82" name="Join (2)" width="90" x="849" y="697"> <parameter key="remove_double_attributes" value="true"/> <parameter key="join_type" value="inner"/> <parameter key="use_id_attribute_as_key" value="false"/> <list key="key_attributes"> <parameter key="uuid" value="uuid"/> </list> <parameter key="keep_both_join_attributes" value="false"/> </operator> <operator activated="true" class="extract_macro" compatibility="9.4.001" expanded="true" height="68" name="Extract Macro" width="90" x="983" y="697"> <parameter key="macro" value="uuid"/> <parameter key="macro_type" value="data_value"/> <parameter key="statistics" value="average"/> <parameter key="attribute_name" value="uuid"/> <parameter key="example_index" value="1"/> <list key="additional_macros"> <parameter key="email" value="email"/> <parameter key="firstname" value="firstname"/> <parameter key="lastname" value="lastname"/> <parameter key="mobile" value="mobile"/> <parameter key="id_number" value="id_number"/> </list> </operator> <connect from_port="example set" to_op="Extract Macro (4)" to_port="example set"/> <connect from_op="generate query" from_port="output" to_op="overwrite query (4)" to_port="document"/> <connect from_op="overwrite query (4)" from_port="document" to_op="Execute Program (4)" to_port="through 1"/> <connect from_op="Execute Program (4)" from_port="out" to_op="Execute Program (6)" to_port="through 1"/> <connect from_op="generate query (3)" from_port="output" to_op="overwrite query (3)" to_port="document"/> <connect from_op="overwrite query (3)" from_port="document" to_op="Execute Program (5)" to_port="through 1"/> <connect from_op="Execute Program (5)" from_port="out" to_op="Execute Program" to_port="through 1"/> <connect from_op="generate queru (2)" from_port="output" to_op="overwrite query (2)" to_port="document"/> <connect from_op="overwrite query (2)" from_port="document" to_op="Execute Program (3)" to_port="through 1"/> <connect from_op="Loop Files" from_port="output 1" to_op="Append" to_port="example set 1"/> <connect from_op="Loop Files" from_port="output 2" to_op="Append (3)" to_port="example set 1"/> <connect from_op="Loop Files" from_port="output 3" to_op="Append (4)" to_port="example set 1"/> <connect from_op="Append (4)" from_port="merged set" to_op="Join (2)" to_port="left"/> <connect from_op="Append (3)" from_port="merged set" to_op="Join" to_port="right"/> <connect from_op="Append" from_port="merged set" to_op="Join" to_port="left"/> <connect from_op="Join" from_port="join" to_op="Join (2)" to_port="right"/> <connect from_op="Join (2)" from_port="join" to_op="Extract Macro" to_port="example set"/> <portSpacing port="source_example set" spacing="0"/> <portSpacing port="sink_example set" spacing="0"/> <portSpacing port="sink_output 1" spacing="0"/> </process> </operator> <connect from_op="Create ExampleSet" from_port="output" to_op="Loop Examples" to_port="example set"/> <connect from_op="Loop Examples" from_port="example set" to_port="result 1"/> <portSpacing port="source_input 1" spacing="0"/> <portSpacing port="sink_result 1" spacing="0"/> <portSpacing port="sink_result 2" spacing="0"/> <description align="left" color="yellow" colored="false" height="105" resized="false" width="180" x="208" y="289">Snag list<br>1. Fix .sh execution<br><br></description> </process> </operator> </process>The code for the bulk file which I am able to execute from terminal is as follows
</code>./master.sh ./mobile.sh ./email.sh ./sync.sh aws s3 rm s3://psyscores/output --recursive </pre><div>I then attempt to execute this bulk file from RM.</div><pre class="CodeBlock"><code><?xml version="1.0" encoding="UTF-8"?><process version="9.4.001"> <context> <input/> <output/> <macros/> </context> <operator activated="true" class="process" compatibility="9.4.001" expanded="true" name="Process"> <parameter key="logverbosity" value="init"/> <parameter key="random_seed" value="2001"/> <parameter key="send_mail" value="never"/> <parameter key="notification_email" value=""/> <parameter key="process_duration_for_mail" value="30"/> <parameter key="encoding" value="SYSTEM"/> <process expanded="true"> <operator activated="true" class="productivity:execute_program" compatibility="9.4.001" expanded="true" height="103" name="Execute Program (2)" width="90" x="112" y="136"> <parameter key="command" value="chmod +x bulk.sh"/> <parameter key="log_stdout" value="true"/> <parameter key="log_stderr" value="true"/> <parameter key="working_directory" value="/Users/robinmeisel/Dropbox/psyscore"/> <list key="env_variables"/> </operator> <operator activated="true" class="productivity:execute_program" compatibility="9.4.001" expanded="true" height="103" name="Execute Program" width="90" x="246" y="136"> <parameter key="command" value="./bulk.sh"/> <parameter key="log_stdout" value="true"/> <parameter key="log_stderr" value="true"/> <parameter key="working_directory" value="/Users/robinmeisel/Dropbox/psyscore"/> <list key="env_variables"/> </operator> <portSpacing port="source_input 1" spacing="0"/> <portSpacing port="sink_result 1" spacing="0"/> </process> </operator> </process>This is the response I get (remembering that I was able to execute via terminal)I added this very simple "hello.sh" file inside my Downloads folder:
I then ran chmod +x hello.sh, and afterwards ls -la, resulting in:
total 24
drwx------+ 5 mboeck staff 160 4 Nov 17:05 .
drwxr-xr-x+ 29 mboeck staff 928 4 Nov 13:41 ..
-rwxr-xr-x@ 1 mboeck staff 38 4 Nov 13:42 hello.sh
Admins-MacBook-Pro:Downloads mboeck$
My process for relative path:
<?xml version="1.0" encoding="UTF-8"?><process version="9.5.000-BETA3"> <context> <input/> <output/> <macros/> </context> <operator activated="true" class="process" compatibility="9.5.000-BETA3" expanded="true" name="Process"> <parameter key="logverbosity" value="init"/> <parameter key="random_seed" value="2001"/> <parameter key="send_mail" value="never"/> <parameter key="notification_email" value=""/> <parameter key="process_duration_for_mail" value="30"/> <parameter key="encoding" value="SYSTEM"/> <process expanded="true"> <operator activated="true" class="retrieve" compatibility="9.5.000-BETA3" expanded="true" height="68" name="Retrieve Deals" width="90" x="45" y="34"> <parameter key="repository_entry" value="//Samples/data/Deals"/> </operator> <operator activated="true" class="productivity:execute_program" compatibility="9.5.000-BETA3" expanded="true" height="124" name="Execute Program" width="90" x="179" y="34"> <parameter key="command" value="/Users/mboeck/Downloads/hello.sh"/> <parameter key="log_stdout" value="true"/> <parameter key="log_stderr" value="true"/> <list key="env_variables"/> </operator> <connect from_op="Retrieve Deals" from_port="output" to_op="Execute Program" to_port="through 1"/> <connect from_op="Execute Program" from_port="out" to_port="result 1"/> <connect from_op="Execute Program" from_port="err" to_port="result 2"/> <connect from_op="Execute Program" from_port="through 1" to_port="result 3"/> <portSpacing port="source_input 1" spacing="0"/> <portSpacing port="sink_result 1" spacing="0"/> <portSpacing port="sink_result 2" spacing="0"/> <portSpacing port="sink_result 3" spacing="0"/> <portSpacing port="sink_result 4" spacing="0"/> </process> </operator> </process> </code><?xml version="1.0" encoding="UTF-8"?><process version="9.5.000-BETA3"> <context> <input/> <output/> <macros/> </context> <operator activated="true" class="process" compatibility="9.5.000-BETA3" expanded="true" name="Process"> <parameter key="logverbosity" value="init"/> <parameter key="random_seed" value="2001"/> <parameter key="send_mail" value="never"/> <parameter key="notification_email" value=""/> <parameter key="process_duration_for_mail" value="30"/> <parameter key="encoding" value="SYSTEM"/> <process expanded="true"> <operator activated="true" class="retrieve" compatibility="9.5.000-BETA3" expanded="true" height="68" name="Retrieve Deals" width="90" x="45" y="34"> <parameter key="repository_entry" value="//Samples/data/Deals"/> </operator> <operator activated="true" class="productivity:execute_program" compatibility="9.5.000-BETA3" expanded="true" height="124" name="Execute Program" width="90" x="179" y="34"> <parameter key="command" value="./hello.sh"/> <parameter key="log_stdout" value="true"/> <parameter key="log_stderr" value="true"/> <parameter key="working_directory" value="/Users/mboeck/Downloads"/> <list key="env_variables"/> </operator> <connect from_op="Retrieve Deals" from_port="output" to_op="Execute Program" to_port="through 1"/> <connect from_op="Execute Program" from_port="out" to_port="result 1"/> <connect from_op="Execute Program" from_port="err" to_port="result 2"/> <connect from_op="Execute Program" from_port="through 1" to_port="result 3"/> <portSpacing port="source_input 1" spacing="0"/> <portSpacing port="sink_result 1" spacing="0"/> <portSpacing port="sink_result 2" spacing="0"/> <portSpacing port="sink_result 3" spacing="0"/> <portSpacing port="sink_result 4" spacing="0"/> </process> </operator> </process> </pre><div>My process with absolute path:</div><div><pre class="CodeBlock"><code>Regards,
Marco
What version of the CLI are you using? Maybe my issue lies there. Any other reason why I would not be able to call the CLI via shell?
I was using whatever the standard Terminal on OS X 10.15.1 is.
The only explanation I have would be that for some reason the AWS CLI requires elevated permissions and when you start from the Terminal you have those, while Studio is started with normal permissions? I have no experience in permission management on OS X to be honest..
Regards,
Marco
https://docs.aws.amazon.com/cli/latest/userguide/install-macos.html
No, I did not, and as shown above, I only tested very simple scripts that had nothing to do with a 3rd party library. So it will have to do something with permissions. Did you maybe enable root access for your Terminal at some point previously?
Regards,
Marco
https://community.rapidminer.com/discussion/55899/using-aws-image-ml-inside-a-rapidminer-process
Suggestions in terms of remediating? Reinstall the CLI? Reinstall RapidMiner?
PS: Can I update the Rekognition process to include remarks for people who will not be familiar with the CLI?
As for better documentation on the Rekognition KB - yes please!